Timeline
09/09/07:
- 11:49 Changeset [2081] by
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Backport cHeadCPU::Adjust performance enhancement into stable.
- 11:40 Changeset [2080] by
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Performance tweak in cHeadCPU::Adjust. Perform integer division only when ...
09/08/07:
- 19:20 Changeset [2079] by
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Tag 2.8.0 stable release.
- 19:19 Changeset [2078] by
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Tag 2.7.0 development release.
- 19:11 Changeset [2077] by
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Merge in energe model changes from development branch.
- 15:00 Changeset [2076] by
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Ported r2030:2042 from development to collect branch.
- 14:27 Changeset [2075] by
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Added DETAIL options for the number of different tasks done and the total ...
- 00:00 Milestone Avida 2.7 completed
09/07/07:
- 15:42 Changeset [2074] by
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Clear up warning in avida.cc.
- 15:40 Changeset [2073] by
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Add new cDemeCellEvent.cc file into CMakeLists.txt
- 15:38 Changeset [2072] by
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Added very breif energy model doc.
- 15:36 Changeset [2071] by
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Regenerated energy_deme_level_res tests
- 15:34 Changeset [2070] by
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Merged energy model branch
- 14:02 Changeset [2069] by
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Merged development branch
- 13:38 Changeset [2068] by
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Copying tests
- 11:40 Changeset [2067] by
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Added very breif energy model documentation
- 09:00 Changeset [2066] by
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Added cDemeCellEvent
09/06/07:
- 20:34 Changeset [2065] by
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Sync config file with internal defaults and setting options.
- 20:33 Changeset [2064] by
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Remove developmental coregui from stable branch.
- 16:28 Changeset [2063] by
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Fixing my local mistake
- 14:55 Changeset [2062] by
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Preparing for merger with development
- 14:48 Changeset [2061] by
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Added: data field to cPopulationCell collect-cell-data ...
- 11:58 Changeset [2060] by
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Remove incomplete/experimental AvidaScript? from the stable branch.
- 11:52 Changeset [2059] by
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Remove completed trunk branch.
- 11:52 Changeset [2058] by
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Tag 2.6.3 release.
- 11:49 Changeset [2057] by
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Remove stale 2.6.3 release tag.
- 11:48 Changeset [2056] by
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Port cMerit fixes from development into trunk.
- 11:30 Changeset [2055] by
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Port cMerit fixes from development into stable.
- 11:27 Changeset [2054] by
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Clean up unused utils in the stable branch.
- 11:01 Changeset [2053] by
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Fix to cMerit::UpdateValue? so that it does not crash under certain ...
09/05/07:
- 16:27 Changeset [2052] by
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Remove experimental (and probably very broken at the moment) python ...
- 16:22 Changeset [2051] by
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Update stable branch version information.
- 16:15 Changeset [2050] by
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Remove invalid and experimental tests from stable branch.
- 16:13 Changeset [2049] by
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Create new 'stable' branch where 2.8 will reside based on current ...
- 16:06 Changeset [2048] by
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Update release-milestones.
- 15:53 Changeset [2047] by
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added yet another optimize task
- 15:52 Changeset [2046] by
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added repro-sex inst to execute repro using sex
- 15:33 Changeset [2045] by
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Tag 2.6.3 release.
- 15:32 Changeset [2044] by
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Update trunk version number.
- 15:07 Changeset [2043] by
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Add new expected results.
- 15:02 Changeset [2042] by
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Remove consistency test expected results that are affected by the change ...
- 14:18 Changeset [2041] by
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Update cMutationRates to check select mutation rate values prior to ...
09/03/07:
- 18:24 Changeset [2040] by
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Another small fix for END command handling in cAnalyze.
09/02/07:
- 21:05 Changeset [2039] by
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Added logic to cAnalyzeGenotypeTreeStats for detecting incomplete ...
- 20:48 Changeset [2038] by
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Fix bug in class cAnalyzeGenotypeTreeStats where tree nodes with one child ...
- 15:36 Changeset [2037] by
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Added printfs for debugging class cAnalyzeGenotypeTreeStats.
- 14:44 Changeset [2036] by
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Added error-checking and feedback messages to class ...
- 00:35 Changeset [2035] by
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Added class cAnalyzeGenotypeTreeStats to Xcode project.
09/01/07:
- 22:12 Changeset [2034] by
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Added cAnalyzeGenotypeTreeStats to build.
- 22:06 Changeset [2033] by
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Added coded for the analyze command PRINT_TREE_STATS. It's used like ...
08/31/07:
- 20:21 Changeset [2032] by
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Fix infinite looping in cAnalyze::LoadCommandList?. Adjust access of ...
- 15:19 Changeset [2031] by
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Modifying environment input storage for phenotypic plasticity functions.
08/30/07:
- 15:04 Changeset [2030] by
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Porting development r2014:2016, r2017:2019, r2020:2026, and r2027:2028 to ...
- 14:26 Changeset [2029] by
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Porting development r1977:2014 to collect branch.
- 12:30 Changeset [2028] by
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A few small performance tweaks.
- 09:47 Changeset [2027] by
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Porting development r1975:1977 to collect branch.
08/29/07:
- 13:13 Changeset [2026] by
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* New logic promoter model Seems to be working correctly, but not yet ...
- 09:09 Changeset [2025] by
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Added option to GERMLINE_RANDOM_PLACEMENT that orients organisms that are ...
08/28/07:
- 22:12 Changeset [2024] by
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AS: Parse Array Unpack.
- 15:38 Changeset [2023] by
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Porting development r1910:1975 to the collect branch.
- 14:53 Changeset [2022] by
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Merged development into energy branch (1980-2021)
- 14:50 Changeset [2021] by
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Added DumpSleepGrid? print action
- 12:09 Changeset [2020] by
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Porting development r1888:1910 into collect branch.
Conflict ...
08/27/07:
- 22:52 Changeset [2019] by
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Small fix to tArray::Subset.
- 16:27 Changeset [2018] by
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AS: Array unpack construction (not printing yet).
- 15:45 Changeset [2017] by
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Syncing collect branch to development from r1831:1888; resolved conflicts ...
- 15:27 Changeset [2016] by
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Reverse the order that inst_code is read.
- 12:52 Changeset [2015] by
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Fix the implementation of tArray::Subset.
- 12:49 Changeset [2014] by
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Fix the implementation of tArray::operator+.
- 11:19 Changeset [2013] by
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AS: Array/Matrix dimension specification.
- 10:35 Changeset [2012] by
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AS: Variable definition lists.
- 09:41 Changeset [2011] by
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Continued support for messaging between organisms. Added message ...
08/25/07:
- 13:39 Changeset [2010] by
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Added new CMakeList for HPC (to find boost)
- 13:25 Changeset [2009] by
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Ratiometric task quality for non-determinism.
- 13:09 Changeset [2008] by
08/24/07:
- 16:43 Changeset [2007] by
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Made canges to the code that produces movies from outputted grid files.
...
- 15:59 Changeset [2006] by
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AS: Audit and comment todo items in cParser.
- 15:50 Changeset [2005] by
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AS: Argument lists and literal arrays/matrices.
- 15:37 Changeset [2004] by
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First merge of messaging support from coopcoom:
New file, cOrgMessage, ...
- 15:19 Changeset [2003] by
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Minor output changes
- 14:35 Changeset [2002] by
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AS: Parse all forms of call expressions.
- 09:38 Changeset [2001] by
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Added get-cell-xy and dist-from-diag instructions.
08/23/07:
- 22:23 Changeset [2000] by
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Refreshing energy_deme_level_res test
- 22:03 Changeset [1999] by
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Removing energy_deme_level_res.
- 22:02 Changeset [1998] by
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Organisms now die when they don't have enough energy to pay the energy ...
- 21:14 Changeset [1997] by
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Removed promoter model from cPhenotype. Stubs for new logic promoter model ...
- 16:18 Changeset [1996] by
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AS: Parse function calls.
- 15:45 Changeset [1995] by
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Implement instruction binary code support in cInstSet. Only available via ...
- 13:14 Changeset [1994] by
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Changed energy model! If the organism can't pay the energy cost its merit ...
- 12:43 Changeset [1993] by
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New results for energy_deme_level_res. Organism facing was not preset ...
- 12:38 Changeset [1992] by
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Regenerating expected results for energy_deme_level_res
- 12:36 Changeset [1991] by
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Added config option for seed-model.cfg.
- 12:27 Changeset [1990] by
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fixed copy bug
- 11:51 Changeset [1989] by
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Added DumpExecutionRatioGrid? print action
- 10:33 Changeset [1988] by
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Added DumpEnergyGrid? print action
08/22/07:
- 16:15 Changeset [1987] by
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AS: Small fix to error reporting.
- 15:56 Changeset [1986] by
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Updated to use cached seed information.
- 15:33 Changeset [1985] by
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Bug fix: energy model version of ReplicateDemes? not resets the facing of ...
- 15:23 Changeset [1984] by
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AS: Remove END... block forms. Add elseif.
- 11:27 Changeset [1983] by
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Changing asserts to exits.
- 11:15 Changeset [1982] by
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Stronger error checking on coprocess.
- 10:47 Changeset [1981] by
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Bugfix to java execl.
08/21/07:
- 14:11 Changeset [1980] by
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Creating energy branch from development
- 14:10 Changeset [1979] by
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Removing old energy branch
- 13:40 Changeset [1978] by
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re-establishing deme test expected results
- 13:30 Changeset [1977] by
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Fixing deme config files where organisms are injected at update 0. They ...
- 13:21 Changeset [1976] by
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Added deme spacial energy resource test
- 13:17 Changeset [1975] by
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removing partial energy_deme_level_res
- 13:10 Changeset [1974] by
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Added updated energy model tests
- 13:01 Changeset [1973] by
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Merging current version of energy branch into development
Added: - ...
- 12:05 Changeset [1972] by
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Added test of multivar, lim res, optimization prob
- 12:03 Changeset [1971] by
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removing out-of-date tests
- 09:48 Changeset [1970] by
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Added a 13 state; enabled both properties to be checked.
- 07:47 Changeset [1969] by
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Removed the ability to include null trans in scenario paths. It was ...
08/20/07:
- 21:27 Changeset [1968] by
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Enabled scenario satisfaction to include null transitions.
- 20:44 Changeset [1967] by
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Remove assert that doesn't work in Release mode
- 15:50 Changeset [1966] by
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- Clean up cPopulationCell somewhat, most importantly adding proper ...
- 14:53 Changeset [1965] by
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Dave is the man. Fixed memory leak in PrintDemeSpacialEnergy?, and changed ...
- 13:27 Changeset [1964] by
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Next update of the new GUI interface. Map modes are starting to work...
- 00:11 Changeset [1963] by
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Added the -a option for pan back in.
08/19/07:
- 15:06 Changeset [1962] by
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Forcing cDataFile closer; still trying to save memory
- 08:38 Changeset [1961] by
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Trying to avoid a bad alloc
08/18/07:
- 11:49 Changeset [1960] by
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Repair mutation reversion function.
- 00:00 Changeset [1959] by
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Changed it so that organisms can not add self-transitions
08/17/07:
- 16:49 Changeset [1958] by
- 16:20 Changeset [1957] by
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looking for memory hog
- 15:00 Changeset [1956] by
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- Move avida.h/cc into a namespace (called Avida) - Move command line ...
- 11:28 Changeset [1955] by
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Added some deme-level print actions
- 10:43 Changeset [1954] by
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Split up cPopulation::PrintDemeStats? into subfuctions so that it is easier ...
- 08:11 Changeset [1953] by
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stats fix.
08/16/07:
- 21:36 Changeset [1952] by
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Reward rebalancing & fix to witness trace run. (Removed -a)
- 16:38 Changeset [1951] by
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Relax the requirement that -c be specified first. Add support for ...
- 16:06 Changeset [1950] by
- 14:34 Changeset [1949] by
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More adjustment to cInstSet loading. Add some more error checking and ...
- 13:43 Changeset [1948] by
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Centralize handling of NULL instruction insertion for Knockout tests. ...
- 13:24 Changeset [1947] by
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removing some deme stats files
- 12:34 Changeset [1946] by
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Bug fix for witness trace reporting and when min-trans is called.
- 08:50 Changeset [1945] by
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added pseudo-hydra task
- 08:22 Changeset [1944] by
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Commented out excessive data files in PrintDemeStats?. PrintDemeStats? ...
08/15/07:
- 20:01 Changeset [1943] by
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Added new case (4) for calling hydra when the scenarios are complete and ...
- 16:46 Changeset [1942] by
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Rework cInitFile, folding in all common actions into the constructor(s). ...
- 15:56 Changeset [1941] by
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Removed notion of cell-level energy. Energy is either in the organism or ...
- 13:57 Changeset [1940] by
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First pass at implementing a new more flexible instruction set file ...
- 13:26 Changeset [1939] by
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Added energy model specific portion to ReplicateDemes?. Orginal version of ...
- 12:50 Changeset [1938] by
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Strengthened non-determinism task.
- 12:40 Changeset [1937] by
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WARNING: InjectDeme? injects on organism over the initial ancestor. ...
- 12:37 Changeset [1936] by
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Fix various minor errors that Intel's ICC complained about.
- 00:07 Changeset [1935] by
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Fixed mixup in IMPLICIT_REPRO options. Adjusted some cHardwareCPU promoter ...
08/14/07:
- 16:07 Changeset [1934] by
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Added instruction support for third state diagram.
08/13/07:
- 21:59 Changeset [1933] by
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Added code that checks if the state diagram is non-deterministic. Changed ...
- 16:21 Changeset [1932] by
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Forgot Endls
- 14:59 Changeset [1931] by
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Added energy donate instruction and more energy related outptu
- 14:05 Changeset [1930] by
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bug fix: scenario completion was not taking starting state into account ...
- 12:48 Changeset [1929] by
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Fixed a bug regarding when the witness trace process passed. Changed stats ...
- 11:00 Changeset [1928] by
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Reimplementation of multi-objective network fitness functions.
- 08:36 Changeset [1927] by
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Added mutation reversion analyze command.
08/12/07:
- 17:14 Changeset [1926] by
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* simplified HardwareCPU promoter model/regulation. * option for slip ...
08/10/07:
- 16:34 Changeset [1925] by
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Added energy resource and FRAC_ENERGY_TRANSFER. FRAC_ENERGY_TRANSFER ...
- 10:35 Changeset [1924] by
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HPC doesn't like integers in log(2), use log (2.0)
- 10:34 Changeset [1923] by
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Bug fix: slip mutations givine zero length organisms
