Avida

 

Timeline


and .

05/21/07:

22:50 Changeset [1584] by brysonda

Update visual studio project with recent changes. Add support for visual ...

22:25 Changeset [1583] by brysonda

Restore scons-clobbered VC Project.

08:34 Changeset [1582] by goingssh

commiting new results of stringmatch test

08:33 Changeset [1581] by goingssh

fixing stringmatch test as well

08:20 Changeset [1580] by goingssh

commiting expected results for fixed optimize task

08:18 Changeset [1579] by goingssh

fixing optimize tests

05/20/07:

20:53 Changeset [1578] by dknoester

quick test with group-based resources for building links.

19:12 Changeset [1577] by dknoester

Checking mean lsp first, then edge count.

14:57 Changeset [1576] by brysonda

Optimize task has some bugs in it that need fixing. Temporarily disable ...

14:49 Changeset [1575] by brysonda

Add SetupFloatingPointEnvironment?() in new FloatingPoint?.h. This method ...

05/19/07:

22:49 Changeset [1574] by hjg

Bug fix regarding ordering of models.

21:48 Changeset [1573] by kaben

Truncated path names in organism scope and petri dish.

05/18/07:

14:58 Changeset [1572] by baerb

Refreshes freezer list after import complete.

08:25 Changeset [1571] by hjg

05/17/07:

18:56 Changeset [1570] by dknoester

resetting model following competitions.

11:26 Changeset [1569] by hjg
10:28 Changeset [1568] by baerb

Implimented basic export and import in Avida-ED

09:39 Changeset [1567] by hjg

Each model now maintains its own indices used to manipulate the various ...

08:28 Changeset [1566] by jclune

cleanup of my fitness valley toggle events

05/16/07:

17:24 Changeset [1565] by goingssh

And what are tests without expected values? Worthless...

17:11 Changeset [1564] by goingssh

Minor fix in test, sorry for all the emails...

16:59 Changeset [1563] by goingssh

Made tests faster with smaller pops

16:47 Changeset [1562] by goingssh

updating events so tests actually test something

16:41 Changeset [1561] by jclune

inconsequential change to test commit

16:40 Changeset [1560] by goingssh

Adding consistency tests for avida as GA, optimize task, and string match ...

05/15/07:

20:18 Changeset [1559] by hjg

bug fix

19:58 Changeset [1558] by hjg

Added support for stats & file export.

15:39 Changeset [1557] by dknoester

stats printing

14:52 Changeset [1556] by hjg

Enabled a deme of organisms to manipulate a UML diagram consisting of ...

10:13 Changeset [1555] by goingssh

Added a couple more problems to optimize function

05/14/07:

19:42 Changeset [1554] by matt

Base cclade tracking on genotype ID; allow for injected genotypes to be ...

14:36 Changeset [1553] by matt

Fix cLineage.h

14:25 Changeset [1552] by matt

Implement coalescence clade tracking, a second pass operation.

14:21 Changeset [1551] by dknoester

Adding organism* to cTaskContext.

13:59 Changeset [1550] by hjg
10:34 Changeset [1549] by dknoester

More fixes to cHardwareGX, if-bind2 instruction.

05/13/07:

21:28 Changeset [1548] by barrick

bind2 could cause write and read head to be on same programid, causing ...

05/12/07:

21:25 Changeset [1547] by dknoester

Forgot to update instset-gx.cfg

21:20 Changeset [1546] by dknoester

Update to cHardwareGX. Added =bind2= instruction, programid for ...

05/11/07:

22:39 Changeset [1545] by hjg
22:34 Changeset [1544] by hjg

Enabled each deme to have a UML model where each organism has a state ...

14:41 Changeset [1543] by dknoester

Stable cHardwareGX.

12:51 Changeset [1542] by barrick

Fixed some stale pointer problems...

10:57 Changeset [1541] by brysonda

A couple more updates to CMakeLists to support HPC builds. It is now ...

10:48 Changeset [1540] by brysonda

Initial stab at HPC compatibility in CMake build system.

05/10/07:

17:23 Changeset [1539] by dknoester

Update to cHardwareGX; no longer replicates.

11:11 Changeset [1538] by dknoester

Normalized fitness for edge count and diameter.

10:57 Changeset [1537] by dknoester

Logging changes.

09:28 Changeset [1536] by dknoester

Another day, another network fitness function.

05/09/07:

10:07 Changeset [1535] by hjg

The beginning of infrastructure changes to enable a deme to construct a ...

05/07/07:

22:11 Changeset [1534] by dknoester

Yet another network fitness function.

13:37 Changeset [1533] by jclune

fixed the outlining, I hope

13:32 Changeset [1532] by jclune

testing svn

08:59 Changeset [1531] by dknoester

Changing fitness function for graph diameter.

05/05/07:

15:48 Changeset [1530] by barrick

GX Hardware Update.

Internal copying of programids and cell division ...

05/04/07:

16:19 Changeset [1529] by hjg

New cUMLModel.* and cUMLStateDiagram.* files.

16:18 Changeset [1528] by hjg

Finished merge of development branch changes into UML branch.

Changed ...

15:47 Changeset [1527] by dknoester

Added new ReplicateDemes? event for small diameter networks.

05/03/07:

21:18 Changeset [1526] by dknoester

Reapplying demes test fix to this branch.

18:35 Changeset [1525] by brysonda

Add a new target, unit-tests, for developing no frills testing for core ...

13:36 Changeset [1524] by blwalker

Ported r1508:1523 from development.

13:00 Changeset [1523] by blwalker

Added an option to the DETAIL command in analyze mode. Analogous to ...

12:14 Changeset [1522] by brysonda

Rodan's compiler doesn't understand -Wno-four-char-constants.

12:11 Changeset [1521] by brysonda

Reorgainize CMake build system. Collapse most of the unnecessary ...

10:38 Changeset [1520] by baerb

Added casting an integer to double inside a log function. Needed on ...

09:22 Changeset [1519] by hjg

Merge development branch changes into UML branch. (step 2)

09:14 Changeset [1518] by hjg

Created new UML branch from development - revision 1517.

09:04 Changeset [1517] by hjg

Merging development branch changes into UML branch (step one).

05/02/07:

14:00 Changeset [1516] by brysonda

Fix failing deme tests. Cause was floating point round off error exposed ...

05/01/07:

22:13 Changeset [1515] by brysonda

Change negative zero case handling to use integer comparison rather ...

21:54 Changeset [1514] by brysonda

Update to TestRunner? 1.3b. (small tweaks to performance testing)

20:05 Changeset [1513] by brysonda

Remove some non-existent files from the Xcode project.

11:42 Changeset [1512] by brysonda

Disable 2step landscape for default long tests. Its LONG.

09:31 Changeset [1511] by dknoester

Added a hexagonal (6-neighbor) grid topology, and deme-based test for ...

08:49 Changeset [1510] by dknoester

Added config option to fully populate replicated demes; works well with ...

04/29/07:

19:51 Changeset [1509] by hjg

checkpoint

17:44 Changeset [1508] by blwalker

Ported r1451:1507 from development.

04/28/07:

12:37 WikiStart edited by brysonda
(diff)

04/27/07:

23:05 Ticket #1 (AvidaScript) created by brysonda
Desire full featured scripting language for creating entire experiments …
13:52 Changeset [1507] by brysonda

Fix Linux compile error in cDeme.

11:12 Changeset [1506] by dknoester

This commit: - Merges germline support and tests into the development ...

04/26/07:

23:48 Changeset [1505] by dknoester

Checkpoint commit for cHardwareGX; touches cGenome and cCPUMemory.

22:49 Changeset [1504] by dknoester

This commit: - Adds a new WORLD_GEOMETRY type, CLIQUE (completely ...

16:53 Changeset [1503] by beckma24

Fixed bugs: *caused incorrect counting of sleeping organisms *applied ...

04/25/07:

08:54 Changeset [1502] by baerb

Minor change in dialog box, mostly an SVN test.

01:49 Changeset [1501] by beckma24

Added config option to turn off logging of sleep intervals.

04/24/07:

17:18 Changeset [1500] by goingssh

made all occurrences of log(2) in cPhenotype.cc log(2.0) since VS is ...

03:20 Changeset [1499] by barrick

Various minor Promoter Model related tweaks..

04/23/07:

09:34 Changeset [1498] by brysonda

Remove vestigial top level consistency test directory.

01:04 Changeset [1497] by barrick

Fixed cStats initialization for tracking =sense= instructions that was ...

04/21/07:

08:14 Changeset [1496] by jclune

fixed bug typo

07:37 Changeset [1495] by jclune

Added FITNESS_VALLEY, FITNESS_VALLEY_START, and FITNESS_VALLEY_STOP, as ...

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