Avida

 

Timeline


and .

09/02/10: Yesterday

12:01 Changeset [3838] by brysonda

Add source organism id and update tracking to cell data. Add additional ...

10:33 Changeset [3837] by dk

fixing avida-mp fallout from biounit merge.

09/01/10:

15:50 Changeset [3836] by brysonda

Close out the biounit branch.

15:49 Changeset [3835] by brysonda

Promote branches/biounit to development. Known bugs: the viewer has not ...

15:47 Changeset [3834] by brysonda

Prepare to promote biounit branch to development.

15:20 Changeset [3833] by brysonda

Update CMakeLists.txt. All tests pass.

15:15 Changeset [3832] by brysonda

Merge r3785:3831 from development in branches/biounit/

15:11 Changeset [3831] by brysonda

Add new hoarding_collect_internal_300u expected results.

15:10 Changeset [3830] by brysonda

Remove hoarding_collect_internal_300u expected ahead of update.

15:05 Changeset [3829] by brysonda

Update heads_default_500u expected results.

15:04 Changeset [3828] by brysonda

Remove heads_default_500u expected ahead of update.

14:59 Changeset [3827] by brysonda

Add new large_pop expected results

14:53 Changeset [3826] by brysonda

Update several long test configs. Remove large_pop expected results ahead ...

14:52 Changeset [3825] by dk

Added bjam files to aid in building Avida-MP; minor bugfix to ...

14:23 Changeset [3824] by brysonda

Mark migration test as long.

14:21 Changeset [3823] by brysonda

Add new expected results.

14:19 Changeset [3822] by brysonda

Remove a few more expected results with only threshold genotype output ...

13:49 Changeset [3821] by brysonda

Add new expected results for bgs_dyn_mutrates_* tests

13:48 Changeset [3820] by brysonda

Remove bgs_dyn_mutrate_* expected ahead of refresh.

13:27 Changeset [3819] by brysonda

Update demes_* expected results with new population save files

13:24 Changeset [3818] by brysonda

Remove demes_* tests expected ahead of refresh

13:20 Changeset [3817] by brysonda

Update heads_midrun_30u expected results.

13:17 Changeset [3816] by brysonda

Restore heads_midrun_30u test without expected results

13:07 Changeset [3815] by brysonda

Remove heads_midrun_30u expected. Result change expectedly with ...

10:17 Changeset [3814] by brysonda

Update replace_deleterious expected results. Allowing variance in ...

10:11 Changeset [3813] by brysonda

Remove replace_deleterious expected results ahead of refresh

10:11 Changeset [3812] by brysonda

Retool cOrganism to use cGenomeTestMetrics to maintain backwards ...

08/31/10:

14:38 Changeset [3811] by brysonda

Allow dominant naming variance in fitvalley_dynamic_mutrate test.

14:24 Changeset [3810] by brysonda

Update expected results of heads_midrun_30u. LoadPopulation? by default ...

14:20 Changeset [3809] by brysonda

Remove heads_midrun_30u expected results ahead of refresh.

14:02 Changeset [3808] by brysonda

Fix small bug in population loading

12:54 Changeset [3807] by brysonda

Update stable branch installer project as well.

12:48 Changeset [3806] by brysonda

Add avida_overview.html to windows installer. Was missing from the ...

08/25/10:

16:51 Changeset [3805] by zaman

fixed broken copy mut for hosts only

16:28 Changeset [3804] by zaman

checkpoint, turned off copy mut in parasites

08/23/10:

14:59 Changeset [3803] by brysonda

Update energy_deme_level_res count.dat file.

14:55 Changeset [3802] by brysonda

Allow altered definition of threshold genotypes. Under the new ...

14:39 Changeset [3801] by brysonda

Handle non-threshold dominant genotypes properly. Also, defer stats ...

13:23 Changeset [3800] by brysonda

Update population save for resources 9r consistency test.

12:06 Changeset [3799] by brysonda

Fix active genotype counting to work properly under sexual reproduction. ...

09:50 Changeset [3798] by brysonda

Alter default population save file extension to remove temporary bg ...

08/20/10:

16:30 Changeset [3797] by brysonda

Fix additional consistency tests events files. Fix a bug with sexual ...

15:14 Changeset [3796] by brysonda

Implement a first pass at backwards compatibility support for population ...

15:05 Changeset [3795] by apwagner

Remove unnecessary assert in cPopulationInterface.

12:43 Changeset [3794] by brysonda

Fix a couple more consistency tests events files.

11:48 Changeset [3793] by brysonda

Fix various demes consistency tests events files.

11:06 Changesets [3791-3792] by brysonda

Fix bgs_dyn_mutrates_rank consistency test events file.

10:34 Changeset [3790] by brysonda

Fix bgs_dyn_mutrates_fit consistency test events file.

10:29 Changeset [3789] by brysonda

Fix bgs_dyn_mutrates_births consistency test events file.

10:17 Changeset [3788] by brysonda

Loaded organisms (SRC_ORGANISM_FILE_LOAD) should not trigger breed_in ...

08/19/10:

16:45 Changeset [3787] by brysonda

Implement cGenomeTestMetrics bio group data object. Use to calculate test ...

14:18 Changeset [3786] by brysonda

Merge r3758:3785 from development into branches/biounit.

14:05 Changeset [3785] by brysonda

Port collect-specific changes from development to stable.

11:58 Changeset [3784] by brysonda

Alter collect-specific instruction to return the amount of resource ...

08/18/10:

17:01 Changeset [3783] by brysonda

Update development branch version information to 2.11.x

16:56 Changeset [3782] by brysonda

Release development branch as 2.10.0 (r3781)

16:55 Changeset [3781] by brysonda

Remove old stable branch, preparing for 2.10.0 release.

16:22 Changeset [3780] by brysonda

Add prepare-package target to Xcode project that copies extra ...

16:01 Changeset [3779] by brysonda

Update main README file. Fix compilation on Windows. Update the Visual ...

16:00 Changeset [3778] by brysonda

Update Xcode project, CMakeLists.txt, and the Windows README.txt file.

13:53 Changeset [3777] by brysonda

Update default avida.cfg file.

13:30 Changeset [3776] by brysonda

Implement support for required resource and level of resource for ...

11:36 Changeset [3775] by brysonda

Reorganize cAvidaConfig.h some. Fix file formatting (indentation) on a ...

08/17/10:

16:58 Changeset [3774] by brysonda

Reorganize avida.cfg (moving mutations towards the top of the file). Add ...

14:55 Changeset [3773] by brysonda

Implement first pass at lethal collision support for organism movement.

12:49 Changeset [3772] by brysonda

Revamp movement instructions. Merge the "Move" action into cOrganism and ...

10:59 Changeset [3771] by brysonda

Remove outdated changes file

10:42 Changeset [3770] by brysonda

Some pending changes to the PrintDebug? action.

08/16/10:

14:54 Changeset [3769] by brysonda

Add stub GenomeTestMetrics? bio group data class.

08/15/10:

17:07 Changeset [3768] by brysonda

Properly reactivate bio group genotypes when organisms are loaded with ...

08/14/10:

19:51 Changeset [3767] by charles

Fixed description of TWO_FOLD_COST_SEX in avida.cfg.

08/10/10:

16:53 Changeset [3766] by brysonda

Fix coalescent handling.

16:29 Changeset [3765] by zaman

removed cout

14:04 Changeset [3764] by zaman

added immunity for any task

13:49 Changeset [3763] by brysonda

Properly propagate inst set id.

11:55 Changeset [3762] by brysonda

Fix various stats settings.

08/09/10:

16:22 Changeset [3761] by brysonda

Add rudimentary support for BioGroup? listeners. Used to process threshold ...

15:47 Changeset [3760] by brysonda

Fix threshold handling of dominant genotypes (specifically sub-threshold ...

12:42 Changeset [3759] by brysonda

Merge r3714:3758 from development. Remove unit test cruft.

12:15 Changeset [3758] by brysonda

Add new consistency test for default configuration (uses structured ...

11:39 Changeset [3757] by baerb

Convert integers to double for VS 2005.

11:30 Changeset [3756] by brysonda

Checkpoint commit.

Fix remaining compile errors. Added ...

08/06/10:

16:39 Changeset [3755] by brysonda

Checkpoint commit.

Fix a couple more references.

Deme germlines and ...

16:10 Changeset [3754] by brysonda

Checkpoint commit.

Fix remaining PrintActions? references to cGenotype.

08/05/10:

17:08 Changeset [3753] by brysonda

Checkpoint commit. Fixed a couple more references to cGenotype.

08/04/10:

11:51 Changeset [3752] by zaman

update multi-threaded stats tracking when threads are created/killed

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