|
|
|
@3628
|
[3628]
|
7 months |
ruppmatt |
Got EventTriggers? with state information using flex vars working.
|
|
|
|
@3627
|
[3627]
|
7 months |
ruppmatt |
Incremental update. Still fussing with triggerable events.
|
|
|
|
@3624
|
[3624]
|
7 months |
ruppmatt |
Incremental changes including addition of triggered event handling via …
|
|
|
|
@3621
|
[3621]
|
7 months |
ruppmatt |
Incremental update to include deme actions, pre and post replacement …
|
|
|
|
@3620
|
[3620]
|
7 months |
ruppmatt |
Adding configuration options to handle additional schedulers.
|
|
|
|
@3619
|
[3619]
|
7 months |
ruppmatt |
Adding Art's deme-based schedulers.
|
|
|
|
@3617
|
[3617]
|
7 months |
ruppmatt |
Updating to fix some bugs. Should be relatively stable now.
|
|
|
|
@3616
|
[3616]
|
7 months |
ruppmatt |
Adding missing files.
|
|
|
|
@3615
|
[3615]
|
7 months |
ruppmatt |
Done implementing deme manager structural changes. Still need to put some …
|
|
|
|
@3612
|
[3612]
|
8 months |
ruppmatt |
Incomplete incremental update.
|
|
|
|
@3610
|
[3610]
|
8 months |
ruppmatt |
Incremental update-- with a number of problems fixed.
|
|
|
|
@3609
|
[3609]
|
8 months |
pakanati |
population = dead (mostly). topology = mess …
|
|
|
|
@3608
|
[3608]
|
8 months |
pakanati |
nearly done liquidating cPopulation, a commit before trying to kill it …
|
|
|
|
@3607
|
[3607]
|
8 months |
pakanati |
pre-cell array movage, post other stuff breakage
|
|
|
|
@3605
|
[3605]
|
8 months |
ruppmatt |
Incremental update to handle deme manager modifications.
|
|
|
|
@3603
|
[3603]
|
8 months |
ruppmatt |
Renaming a cpp to cc file.
|
|
|
|
@3602
|
[3602]
|
8 months |
ruppmatt |
Renaming a cpp to cc file.
|
|
|
|
@3601
|
[3601]
|
8 months |
ruppmatt |
Updating to include a deme manager for my own sanity.
|
|
|
|
@3599
|
[3599]
|
8 months |
pakanati |
working version, flipped topologymanager and population objects
|
|
|
|
@3598
|
[3598]
|
8 months |
goingssh |
updated reset function so doesn't reset parent rewards, only model stuff
|
|
|
|
@3597
|
[3597]
|
8 months |
goingssh |
last few changes to reset models for each org
|
|
|
|
@3596
|
[3596]
|
8 months |
goingssh |
more updates
|
|
|
|
@3595
|
[3595]
|
8 months |
goingssh |
New UML stuff
|
|
|
|
@3593
|
[3593]
|
8 months |
ruppmatt |
Added ability to calculate most likely genotype merit via test CPU …
|
|
|
|
@3592
|
[3592]
|
8 months |
ruppmatt |
Updated inst set redundancy print actions to handle situations when …
|
|
|
|
@3591
|
[3591]
|
8 months |
ruppmatt |
Updated branch to allow for maximally fit ancestor comparisons for …
|
|
|
|
@3588
|
[3588]
|
8 months |
ruppmatt |
Added instset redundancy dump print actions.
|
|
|
|
@3586
|
[3586]
|
8 months |
ruppmatt |
Done with initial implementation of inherited instruction sets. Memory …
|
|
|
|
@3585
|
[3585]
|
8 months |
ruppmatt |
Changing filename from cpp to cc.
|
|
|
|
@3584
|
[3584]
|
8 months |
ruppmatt |
Fixing some casting issues.
|
|
|
|
@3583
|
[3583]
|
8 months |
ruppmatt |
Added backend inheritence functionality.
|
|
|
|
@3579
|
[3579]
|
8 months |
pakanati |
inline problem
|
|
|
|
@3575
|
[3575]
|
9 months |
brysonda |
Add stub files for cBGSpecies and cBGSpeciesManager classes.
Add interface …
|
|
|
|
@3574
|
[3574]
|
9 months |
brysonda |
Begin the work of excising the old cGenotype class.
|
|
|
|
@3572
|
[3572]
|
9 months |
brysonda |
Properly initialize parasite generation in cParasite's cPhenotype object. …
|
|
|
|
@3571
|
[3571]
|
9 months |
brysonda |
Update CMakeLists.txt to support new BioGroup? classes.
|
|
|
|
@3570
|
[3570]
|
9 months |
brysonda |
Parasite genotypes are now output by SaveStructuredPopulationBG.
Enhance …
|
|
|
|
@3568
|
[3568]
|
9 months |
brysonda |
Properly verify parasite target organism hardware type and instruction …
|
|
|
|
@3567
|
[3567]
|
9 months |
brysonda |
Clean up a couple of todo items.
|
|
|
|
@3566
|
[3566]
|
9 months |
brysonda |
Parasites should now be properly tracked via biogroup based genotypes.
|
|
|
|
@3564
|
[3564]
|
9 months |
brysonda |
Work towards biounit based tracking of parasite genotypes. This is …
|
|
|
|
@3562
|
[3562]
|
9 months |
brysonda |
Remove defunct developers branch holding directory.
|
|
|
|
@3561
|
[3561]
|
9 months |
brysonda |
Move Avida-ED branch to the top level of the repository.
|
|
|
|
@3560
|
[3560]
|
9 months |
brysonda |
Alter svn properties inherited from branches/parasites to be generic.
|
|
|
|
@3559
|
[3559]
|
9 months |
brysonda |
Merge r3507:3558 from branches/parasites into branches/biounit. Includes …
|
|
|
|
@3558
|
[3558]
|
9 months |
brysonda |
Merge r3507:3557 from development into branches/parasites
|
|
|
|
@3557
|
[3557]
|
9 months |
zaman |
added option to kill host
|
|
|
|
@3555
|
[3555]
|
9 months |
brysonda |
Merge r3501:3554 from development into branches/biounit
|
|
|
|
@3554
|
[3554]
|
9 months |
brysonda |
Add generation born tracking to cBGGenotype. Output genotype source. …
|
|
|
|
@3552
|
[3552]
|
9 months |
brysonda |
Active and passive reference counting fixes. Size parameter passing to …
|
|
|
|
@3551
|
[3551]
|
9 months |
brysonda |
Add basic support for saving bio group based genotypes.
|
|
|
|
@3550
|
[3550]
|
9 months |
brysonda |
cBGGenotypeManager coalescent and best handling.
|
|
|
|
@3545
|
[3545]
|
9 months |
brysonda |
Handle bggenotype adjustment. Split biogroup references into active and …
|
|
|
|
@3544
|
[3544]
|
9 months |
zaman |
fixed neighborhood bug in non-mass action setup
|
|
|
|
@3542
|
[3542]
|
10 months |
ruppmatt |
Creating copy of CompeteInstSet? to allow for the inheritance of mutable …
|
|
|
|
@3541
|
[3541]
|
10 months |
brysonda |
More deme source handling.
|
|
|
|
@3540
|
[3540]
|
10 months |
brysonda |
Remove defunct matt-hcopy-hack-2 branch
|
|
|
|
@3539
|
[3539]
|
10 months |
brysonda |
Remove defunct matt-hcopy-hack branch
|
|
|
|
@3538
|
[3538]
|
10 months |
brysonda |
Fix a few compile errors in topology manager.
|
|
|
|
@3537
|
[3537]
|
10 months |
brysonda |
Remove defunct collect branch
|
|
|
|
@3536
|
[3536]
|
10 months |
brysonda |
Fix passing bio groups through the birth chamber.
|
|
|
|
@3535
|
[3535]
|
10 months |
pakanati |
another broken version
|
|
|
|
@3534
|
[3534]
|
10 months |
brysonda |
More work on bio unit:
- Instantiate cBGGenotypeManager
- Fix some …
|
|
|
|
@3533
|
[3533]
|
10 months |
brysonda |
A whole bunch of work on bio unit:
- Setting cOrganism eBioUnitSource …
|
|
|
|
@3529
|
[3529]
|
10 months |
brysonda |
More work on biounit. Implemented adjust in cBGGenotypeManager. Start …
|
|
|
|
@3528
|
[3528]
|
10 months |
brysonda |
Some more methods implemented in cBGGenotype.
|
|
|
|
@3527
|
[3527]
|
10 months |
brysonda |
More work on biounit. Fleshing out cBGGenotypeManager.
|
|
|
|
@3526
|
[3526]
|
10 months |
brysonda |
Fill out some more biounit class definitions. Add stub cBGGenotypeManager …
|
|
|
|
@3524
|
[3524]
|
10 months |
zaman |
changed mass action for parasites
|
|
|
|
@3523
|
[3523]
|
10 months |
brysonda |
Begin defining BioGroup? and BioUnit?. Add start of cBGGenotype …
|
|
|
|
@3520
|
[3520]
|
10 months |
brysonda |
Fix a circular include problem.
|
|
|
|
@3519
|
[3519]
|
10 months |
welsberr |
Sub-dish size testing for Multi-Dish Avida-ED
|
|
|
|
@3518
|
[3518]
|
10 months |
pakanati |
Broken topology manager update again…
|
|
|
|
@3517
|
[3517]
|
10 months |
pakanati |
Broken topology manager update…
|
|
|
|
@3511
|
[3511]
|
10 months |
zaman |
Adding parasite config files
|
|
|
|
@3510
|
[3510]
|
10 months |
zaman |
Getting rid of stale code
|
|
|
|
@3509
|
[3509]
|
10 months |
zaman |
Adding parasite config files
|
|
|
|
@3508
|
[3508]
|
10 months |
zaman |
Adding initial parasite code to branch.
|
|
|
|
@3507
|
[3507]
|
10 months |
zaman |
adding parasites branch
|
|
|
|
@3502
|
[3502]
|
11 months |
brysonda |
Merge -r 3450:3501 from development into branches/biounit.
|
|
|
|
@3491
|
[3491]
|
11 months |
brysonda |
Remove completed tcmalloc-1.4 branch
|
|
|
|
@3487
|
[3487]
|
11 months |
brysonda |
Clean out quite a bit of cruft. At this point the core has drifted too …
|
|
|
|
@3486
|
[3486]
|
11 months |
brysonda |
Disable tcmalloc-1.4 under ICC again. Although it yields performance …
|
|
|
|
@3485
|
[3485]
|
11 months |
brysonda |
Clean up sign comparison warnings in tcmalloc 1.4.
|
|
|
|
@3484
|
[3484]
|
11 months |
brysonda |
Merge r3460:3483 from development into branches/tcmalloc-1.4
|
|
|
|
@3483
|
[3483]
|
11 months |
brysonda |
Remove google-perftools source
|
|
|
|
@3482
|
[3482]
|
11 months |
brysonda |
Enable TCMalloc under ICC. This works fine with the new version 1.4 and …
|
|
|
|
@3481
|
[3481]
|
11 months |
brysonda |
Add missing CHECK_LT definition.
|
|
|
|
@3480
|
[3480]
|
11 months |
brysonda |
Add missing initializer definition.
|
|
|
|
@3479
|
[3479]
|
11 months |
brysonda |
Update CMakeLists.txt
|
|
|
|
@3478
|
[3478]
|
11 months |
brysonda |
Cleanup tcmalloc-platform.h
|
|
|
|
@3477
|
[3477]
|
11 months |
brysonda |
Some more unused code cleanup. File headers updated.
|
|
|
|
@3476
|
[3476]
|
11 months |
brysonda |
Strip more unused code from tcmalloc-1.4.
|
|
|
|
@3475
|
[3475]
|
11 months |
brysonda |
Remove unused stack trace instrumentation and sampler overhead from …
|
|
|
|
@3474
|
[3474]
|
11 months |
brysonda |
Remove now non-existent header includes from tcmalloc.cc
|
|
|
|
@3473
|
[3473]
|
11 months |
brysonda |
Remove malloc hooks from tcmalloc-1.4
|
|
|
|
@3472
|
[3472]
|
11 months |
brysonda |
Correct some additional header includes that affect other platforms.
|
|
|
|
@3471
|
[3471]
|
11 months |
brysonda |
Small change to the compilation settings for tcmalloc-1.4 (remove C++ …
|
|
|
|
@3470
|
[3470]
|
11 months |
brysonda |
Copy additional files and correct various header includes so that …
|
|
|
|
@3463
|
[3463]
|
11 months |
brysonda |
Begin paring down tcmalloc-1.4 to its core.
|
|
|
|
