|
|
|
@3838
|
[3838]
|
24 hours |
brysonda |
Add source organism id and update tracking to cell data.
Add additional …
|
|
|
|
@3837
|
[3837]
|
26 hours |
dk |
fixing avida-mp fallout from biounit merge.
|
|
|
|
@3836
|
[3836]
|
44 hours |
brysonda |
Close out the biounit branch.
|
|
|
|
@3835
|
[3835]
|
44 hours |
brysonda |
Promote branches/biounit to development. Known bugs: the viewer has not …
|
|
|
|
@3834
|
[3834]
|
44 hours |
brysonda |
Prepare to promote biounit branch to development.
|
|
|
|
@3833
|
[3833]
|
45 hours |
brysonda |
Update CMakeLists.txt. All tests pass.
|
|
|
|
@3832
|
[3832]
|
45 hours |
brysonda |
Merge r3785:3831 from development in branches/biounit/
|
|
|
|
@3831
|
[3831]
|
45 hours |
brysonda |
Add new hoarding_collect_internal_300u expected results.
|
|
|
|
@3830
|
[3830]
|
45 hours |
brysonda |
Remove hoarding_collect_internal_300u expected ahead of update.
|
|
|
|
@3829
|
[3829]
|
45 hours |
brysonda |
Update heads_default_500u expected results.
|
|
|
|
@3828
|
[3828]
|
45 hours |
brysonda |
Remove heads_default_500u expected ahead of update.
|
|
|
|
@3827
|
[3827]
|
45 hours |
brysonda |
Add new large_pop expected results
|
|
|
|
@3826
|
[3826]
|
45 hours |
brysonda |
Update several long test configs. Remove large_pop expected results ahead …
|
|
|
|
@3825
|
[3825]
|
45 hours |
dk |
Added bjam files to aid in building Avida-MP; minor bugfix to …
|
|
|
|
@3824
|
[3824]
|
2 days |
brysonda |
Mark migration test as long.
|
|
|
|
@3823
|
[3823]
|
2 days |
brysonda |
Add new expected results.
|
|
|
|
@3822
|
[3822]
|
2 days |
brysonda |
Remove a few more expected results with only threshold genotype output …
|
|
|
|
@3821
|
[3821]
|
2 days |
brysonda |
Add new expected results for bgs_dyn_mutrates_* tests
|
|
|
|
@3820
|
[3820]
|
2 days |
brysonda |
Remove bgs_dyn_mutrate_* expected ahead of refresh.
|
|
|
|
@3819
|
[3819]
|
2 days |
brysonda |
Update demes_* expected results with new population save files
|
|
|
|
@3818
|
[3818]
|
2 days |
brysonda |
Remove demes_* tests expected ahead of refresh
|
|
|
|
@3817
|
[3817]
|
2 days |
brysonda |
Update heads_midrun_30u expected results.
|
|
|
|
@3816
|
[3816]
|
2 days |
brysonda |
Restore heads_midrun_30u test without expected results
|
|
|
|
@3815
|
[3815]
|
2 days |
brysonda |
Remove heads_midrun_30u expected. Result change expectedly with …
|
|
|
|
@3814
|
[3814]
|
2 days |
brysonda |
Update replace_deleterious expected results. Allowing variance in …
|
|
|
|
@3813
|
[3813]
|
2 days |
brysonda |
Remove replace_deleterious expected results ahead of refresh
|
|
|
|
@3812
|
[3812]
|
2 days |
brysonda |
Retool cOrganism to use cGenomeTestMetrics to maintain backwards …
|
|
|
|
@3811
|
[3811]
|
3 days |
brysonda |
Allow dominant naming variance in fitvalley_dynamic_mutrate test.
|
|
|
|
@3810
|
[3810]
|
3 days |
brysonda |
Update expected results of heads_midrun_30u. LoadPopulation? by default …
|
|
|
|
@3809
|
[3809]
|
3 days |
brysonda |
Remove heads_midrun_30u expected results ahead of refresh.
|
|
|
|
@3808
|
[3808]
|
3 days |
brysonda |
Fix small bug in population loading
|
|
|
|
@3807
|
[3807]
|
3 days |
brysonda |
Update stable branch installer project as well.
|
|
|
|
@3806
|
[3806]
|
3 days |
brysonda |
Add avida_overview.html to windows installer. Was missing from the …
|
|
|
|
@3805
|
[3805]
|
9 days |
zaman |
fixed broken copy mut for hosts only
|
|
|
|
@3804
|
[3804]
|
9 days |
zaman |
checkpoint, turned off copy mut in parasites
|
|
|
|
@3803
|
[3803]
|
11 days |
brysonda |
Update energy_deme_level_res count.dat file.
|
|
|
|
@3802
|
[3802]
|
11 days |
brysonda |
Allow altered definition of threshold genotypes. Under the new …
|
|
|
|
@3801
|
[3801]
|
11 days |
brysonda |
Handle non-threshold dominant genotypes properly. Also, defer stats …
|
|
|
|
@3800
|
[3800]
|
11 days |
brysonda |
Update population save for resources 9r consistency test.
|
|
|
|
@3799
|
[3799]
|
11 days |
brysonda |
Fix active genotype counting to work properly under sexual reproduction. …
|
|
|
|
@3798
|
[3798]
|
11 days |
brysonda |
Alter default population save file extension to remove temporary bg …
|
|
|
|
@3797
|
[3797]
|
2 weeks |
brysonda |
Fix additional consistency tests events files.
Fix a bug with sexual …
|
|
|
|
@3796
|
[3796]
|
2 weeks |
brysonda |
Implement a first pass at backwards compatibility support for population …
|
|
|
|
@3795
|
[3795]
|
2 weeks |
apwagner |
Remove unnecessary assert in cPopulationInterface.
|
|
|
|
@3794
|
[3794]
|
2 weeks |
brysonda |
Fix a couple more consistency tests events files.
|
|
|
|
@3793
|
[3793]
|
2 weeks |
brysonda |
Fix various demes consistency tests events files.
|
|
|
|
@3792
|
[3792]
|
2 weeks |
brysonda |
Fix bgs_dyn_mutrates_rank consistency test events file.
|
|
|
|
@3791
|
[3791]
|
2 weeks |
brysonda |
Fix bgs_dyn_mutrates_rank consistency test events file.
|
|
|
|
@3790
|
[3790]
|
2 weeks |
brysonda |
Fix bgs_dyn_mutrates_fit consistency test events file.
|
|
|
|
@3789
|
[3789]
|
2 weeks |
brysonda |
Fix bgs_dyn_mutrates_births consistency test events file.
|
|
|
|
@3788
|
[3788]
|
2 weeks |
brysonda |
Loaded organisms (SRC_ORGANISM_FILE_LOAD) should not trigger breed_in …
|
|
|
|
@3787
|
[3787]
|
2 weeks |
brysonda |
Implement cGenomeTestMetrics bio group data object. Use to calculate test …
|
|
|
|
@3786
|
[3786]
|
2 weeks |
brysonda |
Merge r3758:3785 from development into branches/biounit.
|
|
|
|
@3785
|
[3785]
|
2 weeks |
brysonda |
Port collect-specific changes from development to stable.
|
|
|
|
@3784
|
[3784]
|
2 weeks |
brysonda |
Alter collect-specific instruction to return the amount of resource …
|
|
|
|
@3783
|
[3783]
|
2 weeks |
brysonda |
Update development branch version information to 2.11.x
|
|
|
|
@3782
|
[3782]
|
2 weeks |
brysonda |
Release development branch as 2.10.0 (r3781)
|
|
|
|
@3781
|
[3781]
|
2 weeks |
brysonda |
Remove old stable branch, preparing for 2.10.0 release.
|
|
|
|
@3780
|
[3780]
|
2 weeks |
brysonda |
Add prepare-package target to Xcode project that copies extra …
|
|
|
|
@3779
|
[3779]
|
2 weeks |
brysonda |
Update main README file. Fix compilation on Windows. Update the Visual …
|
|
|
|
@3778
|
[3778]
|
2 weeks |
brysonda |
Update Xcode project, CMakeLists.txt, and the Windows README.txt file.
|
|
|
|
@3777
|
[3777]
|
2 weeks |
brysonda |
Update default avida.cfg file.
|
|
|
|
@3776
|
[3776]
|
2 weeks |
brysonda |
Implement support for required resource and level of resource for …
|
|
|
|
@3775
|
[3775]
|
2 weeks |
brysonda |
Reorganize cAvidaConfig.h some. Fix file formatting (indentation) on a …
|
|
|
|
@3774
|
[3774]
|
2 weeks |
brysonda |
Reorganize avida.cfg (moving mutations towards the top of the file).
Add …
|
|
|
|
@3773
|
[3773]
|
2 weeks |
brysonda |
Implement first pass at lethal collision support for organism movement.
|
|
|
|
@3772
|
[3772]
|
2 weeks |
brysonda |
Revamp movement instructions. Merge the "Move" action into cOrganism and …
|
|
|
|
@3771
|
[3771]
|
2 weeks |
brysonda |
Remove outdated changes file
|
|
|
|
@3770
|
[3770]
|
2 weeks |
brysonda |
Some pending changes to the PrintDebug? action.
|
|
|
|
@3769
|
[3769]
|
3 weeks |
brysonda |
Add stub GenomeTestMetrics? bio group data class.
|
|
|
|
@3768
|
[3768]
|
3 weeks |
brysonda |
Properly reactivate bio group genotypes when organisms are loaded with …
|
|
|
|
@3767
|
[3767]
|
3 weeks |
charles |
Fixed description of TWO_FOLD_COST_SEX in avida.cfg.
|
|
|
|
@3766
|
[3766]
|
3 weeks |
brysonda |
Fix coalescent handling.
|
|
|
|
@3765
|
[3765]
|
3 weeks |
zaman |
removed cout
|
|
|
|
@3764
|
[3764]
|
3 weeks |
zaman |
added immunity for any task
|
|
|
|
@3763
|
[3763]
|
3 weeks |
brysonda |
Properly propagate inst set id.
|
|
|
|
@3762
|
[3762]
|
3 weeks |
brysonda |
Fix various stats settings.
|
|
|
|
@3761
|
[3761]
|
4 weeks |
brysonda |
Add rudimentary support for BioGroup? listeners. Used to process threshold …
|
|
|
|
@3760
|
[3760]
|
4 weeks |
brysonda |
Fix threshold handling of dominant genotypes (specifically sub-threshold …
|
|
|
|
@3759
|
[3759]
|
4 weeks |
brysonda |
Merge r3714:3758 from development. Remove unit test cruft.
|
|
|
|
@3758
|
[3758]
|
4 weeks |
brysonda |
Add new consistency test for default configuration (uses structured …
|
|
|
|
@3757
|
[3757]
|
4 weeks |
baerb |
Convert integers to double for VS 2005.
|
|
|
|
@3756
|
[3756]
|
4 weeks |
brysonda |
Checkpoint commit.
Fix remaining compile errors.
Added …
|
|
|
|
@3755
|
[3755]
|
4 weeks |
brysonda |
Checkpoint commit.
Fix a couple more references.
Deme germlines and …
|
|
|
|
@3754
|
[3754]
|
4 weeks |
brysonda |
Checkpoint commit.
Fix remaining PrintActions? references to cGenotype.
|
|
|
|
@3753
|
[3753]
|
4 weeks |
brysonda |
Checkpoint commit. Fixed a couple more references to cGenotype.
|
|
|
|
@3752
|
[3752]
|
4 weeks |
zaman |
update multi-threaded stats tracking when threads are created/killed
|
|
|
|
@3751
|
[3751]
|
5 weeks |
zaman |
got rid of cout
|
|
|
|
@3750
|
[3750]
|
5 weeks |
zaman |
updated some stuff
|
|
|
|
@3749
|
[3749]
|
5 weeks |
brysonda |
Commit a couple of missed changes from my laptop. (extra comment, new …
|
|
|
|
@3748
|
[3748]
|
5 weeks |
hjg |
added all ones, royal road, and royal road with ditches tasks
|
|
|
|
@3747
|
[3747]
|
6 weeks |
zaman |
added host specificity
|
|
|
|
@3746
|
[3746]
|
6 weeks |
zaman |
added option for parasite memory spaces
|
|
|
|
@3745
|
[3745]
|
7 weeks |
zaman |
added tracking of parasite tasks and host tasks (for single infection …
|
|
|
|
@3744
|
[3744]
|
7 weeks |
zaman |
checkpoint, working on host specific parasites: added tracking of cur_host …
|
|
|
|
@3743
|
[3743]
|
7 weeks |
zaman |
fixed typo in assert
|
|
|
|
@3742
|
[3742]
|
7 weeks |
zaman |
adding parasite memory space offset, IsParasite? to biounit, and the …
|
|
|
|
@3741
|
[3741]
|
7 weeks |
zaman |
branching to include host specific work done while biounits is broken
|
|
|
|
@3740
|
[3740]
|
7 weeks |
zaman |
removing this version, branched from wrong version
|
|
|
|
@3739
|
[3739]
|
7 weeks |
zaman |
branching to include host specific work done while biounits is broken
|
|
|
|
